Plant MITE

SE1810151

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10479
Glycine max
SE1810151
Tc1/Mariner
St7
Gm09:35123627-35123922
TA
TACTCCCTTTGTCCCTAATTATAAGACCATTTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

     C                      A       AAAT   -     C    TTTATA   TCATTTTCTAATTTTTAGATGTATTAATTATTTTTTTTCATACATACCCTTACTTAATTATTCTCTCCAAACATTAATGAGAAACAATTGA
TACTC CTTTGTCCCTAATTATAAGACC TTTTTAG    TTG TTTGT GCTT      AGA                                                                                           
||||| |||||||||||||||||||||| |||||||    ||| ||||| ||||      |||                                                                                           G
ATGAG GAGGCAGGGATTAATATTCTGG GAAAGTT    AAC AAATA TGGG      GTA                                                                                           
     A                      -       ----   T     -    ------   TTTTTTACATCAATCTACTCAATTAGTGTAATTTAAACAGTTAATTAACAGGATAGTAAGGTTTTAATGGGAAAAGAATAGAGAGCTTGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1810151

TACTCCCTTTGTCCCTAATTATAAGACCATTTTTAGAAATTTGTTTGTCGCTTTTTATAAGATCATTTTCTAATTTTTAGATGTATTAATTATTTTTTTTCATACATACCCTTACTTAATTATTCTCTCCAAACATTAATGAGAAACAATTGAGTGGTTCGAGAGATAAGAAAAGGGTAATTTTGGAATGATAGGACAATTAATTGACAAATTTAATGTGATTAACTCATCTAACTACATTTTTTATGGGGTATAAATCAATTGAAAGGGTCTTATAATTAGGGACGGAGAGAGTA

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