SE1820154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10482
  • Glycine max
  • SE1820154
  • Mutator
  • M33
  • Gm18:20557091-20557649
  • TTTATATTA
  • TATATTAGACTTAAATATGTTTTAGTCTTTTAAATTTGAATGATTAATTTTTATTCCTTAAAAAAATAACTTACTTTGATTAGTATCTCAAATTTTTGAAAAATTATTTTTAATCCTTCTTTATTCAATGTGTTTATAGTTTCATAATTT

Secondary structure and sequence

TSD    TIR
5'



3'
 TT    TT  A              -   C           AA      A      TTC   A      T  C   C    A     A                           A        -TA   ------    -    TA     --    A    --AAAA    T  TG        CCA    A    --C          AT   T      TATCTTAAAGTGTCAGATATTTGACTCATGGTTTGGTAACCCTTTTTTTTTTAAATACTCTAATGATT
   TATA  AG CTTAAATATGTTTT AGT TTTTAAATTTG  TGATTA TTTTTA   CTT AAAAAA AA TTA TTTG TTAGT TCTCAAATTTTTGAAAAATTATTTTTA TCCTTCTT   TTC      AATG TGTT  TAGTT  TCAT ATTT      TTTA AA  ATTTTTAA   TCAA TTTA   TTTTTGGAAA  AAT TTTGAC                                                                    
   ||||  || |||||||||||||| ||| |||||||||||  |||||| ||||||   ||| |||||| || ||| |||| ||||| ||||||||||||||||||||||||||| ||||||||   |||      |||| ||||  |||||  |||| ||||      |||| ||  ||||||||   |||| ||||   ||||||||||  ||| ||||||                                                                    T
   ATAT  TC GAATTTATACAAAA TCA AAAATTTAAAC  ATTAAT AAAAAT   GAA TTTTTT TT AAT AAAT AATTA GGAGTTTAAAAACTTTTTAATGAAAAT AGGGAGAG   AAG      TTAC ACAA  ATTAA  AGTG TAAA      AGAT TT  TAAAAATT   AGTT AAAT   AGAAATTTTT  ACT AGTACC                                                                    
ATT    -T  -              A   A           CC      A      TCA   A      C  A   -    -     A                           C        TAA   ACGTAC    T    -C     AC    C    CAATGG    T  TA        --A    -    TAA          --   A      ACTAAATTTTGTTGGTTTTATACGGTTTTGTAAGGGTATTAAGATTTAGATAAATAAAAAGAAGAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End