Plant MITE

SE1830155

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10483
Glycine max
SE1830155
hAT
Hat4
Gm13:6885928-6886555
CTTAATAT
TAGGGGTGAGAATAGG

Secondary structure and sequence

TSD TIR

5'

3'

CTTAATAT        A       AC    C      GGCTTTGAAAGGCCTGAGCCTAGCTTACGATGAATTTTTGAGGCCTGAGTCTGACCTATAGCCTATCAAAGGCTTTTATTTTGGCTCGGCCTGACCTTTTTAAAAGCCTAGTCTGGCCTGATAGCCTTTTTAAAAGTCTTCTTCGCATTAAATTTTTAATATTCTGAAGTAGGAGGAACGTAATAGAAAAGTTAAAAAAAAAGGAAACATTAACAGGAATAGGAAAGCCAATAAAAATAATAAGAAATATAAAGGGACACATGACTCACACCTAAATT
        TAGGGGTG GAATAGG  AAGC AGGCCA                                                                                                                                                                                                                                                                                      
        |||||||| |||||||  |||| ||||||                                                                                                                                                                                                                                                                                       
        ATCCCCAC CTTATCC  GTCC AGCCGG                                                                                                                                                                                                                                                                                      
TATAATTC        G       -G    -      ATGTCCCCGGATGCTGGACTGGATGTATTTCAGACCGAACTTGACTGTATAAATTAATTTTCCAATCTGAGTCTGAAAAAATTTTCGGATAATTTAATTTATCTAGTCCGAATTCGAATAATTTTTCGGAATATTCGGATTATCCGGCCGGATATATATACATATATATGAATATAATAAAAAACCCATGTTAATTAAAAAAAAATTTGATCGTCTGAAACTAATGTGTAATGACAAGATATTGAAGATAATGATATTAGTTCATTCTGAAATTAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830155

CTTAATATTAGGGGTGAGAATAGGACAAGCCAGGCCAGGCTTTGAAAGGCCTGAGCCTAGCTTACGATGAATTTTTGAGGCCTGAGTCTGACCTATAGCCTATCAAAGGCTTTTATTTTGGCTCGGCCTGACCTTTTTAAAAGCCTAGTCTGGCCTGATAGCCTTTTTAAAAGTCTTCTTCGCATTAAATTTTTAATATTCTGAAGTAGGAGGAACGTAATAGAAAAGTTAAAAAAAAAGGAAACATTAACAGGAATAGGAAAGCCAATAAAAATAATAAGAAATATAAAGGGACACATGACTCACACCTAAATTGTAATTAAAGTCTTACTTGATTATAGTAATAGAAGTTATAGAACAGTAATGTGTAATCAAAGTCTGCTAGTTTAAAAAAAAATTAATTGTACCCAAAAAATAATATAAGTATATATACATATATATAGGCCGGCCTATTAGGCTTATAAGGCTTTTTAATAAGCTTAAGCCTGATCTATTTAATTTAATAGGCTTTTAAAAAAGTCTGAGTCTAACCTTTTAATTAAATATGTCAGTTCAAGCCAGACTTTATGTAGGTCAGGTCGTAGGCCCCTGTAGGCCGACCTGGCCTATTCGCACCCCTACTTAATAT

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