Plant MITE

SE1820162

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10490
Glycine max
SE1820162
Mutator
M35
Gm08:10966572-10966795
TAAATATAT
ATATATGAGGAATGCTAGTGACTCTATCTAATACTCTTTATGATTGGCTGAACTTTATTGGAAATCACCAATTTTGGCGGGTCCCACTCCTCATTTA

Secondary structure and sequence

TSD TIR

5'

3'

TAA      ---               --------------    A         --C           C    C                  T     C          C  CAT   ATGA
   ATATAT   GAGGAATGCTAGTGA              CTCT TCTAATACT   TTTATGATTGG TGAA TTTATTGGAAATCACCAA TTTGG GGGTCCCACT CT   TTA    
   ||||||   |||||||||||||||              |||| |||||||||   ||||||||||| |||| |||||||||||||||||| ||||| |||||||||| ||   |||     
   TATATA   CTCCTTACGATCGTT              GAGA AGATTGTGA   AGGTACTAGCC ACTT AAATAATCTTTAGTGGTT AAACC CCCAGGGTGA GA   AGT    
         AAT               ATAAGAGATACTAC    A         TAA           A    T                  T     A          A  TTT   CCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820162

TAAATATATGAGGAATGCTAGTGACTCTATCTAATACTCTTTATGATTGGCTGAACTTTATTGGAAATCACCAATTTTGGCGGGTCCCACTCCTCATTTAATGACTCCTGATTTAGAAGTGGGACCCACCAAATTTGGTGATTTCTAATAAATTTCAACCGATCATGGAAATAGTGTTAGAAAGAGCATCATAGAGAATATTGCTAGCATTCCTCTAAATATAT

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