SE1820163

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10491
  • Glycine max
  • SE1820163
  • Mutator
  • M36
  • Gm19:36858106-36858504
  • TTAAAAAAA
  • AAGGCTTAATTACTGTTTTAGTCCTTGAATTTGGGGGTATGCTTTTTTTAGTCCCTAAACTTTAAAAATGCTTTTTTTAGTCCCTGAATTTTGAAAAATTACTTTTTTTAGTCCCCTGACACAGTAAATGGACACTGGCGGCTTTTAAGCACTTTGTGACTGGTTTTTTAGCTCACGTGTTTTTGT

Secondary structure and sequence

TSD    TIR
5'



3'
TTAAAAA                       C     T    G -         TT         A  C                  A                  A  A T           CC     C G     G       --    C      -GCA   --TG   --CTG   T      T   G  TT     TTTC
       AAGGCTTAATTACTGTTTTAGTC TTGAA TTGG G GTATGCTTT  TTAGTCCCT AA TTTAAAAATGCTTTTTTT GTCCCTGAATTTTGAAAA TT C TTTTTTAGTCC  TGACA A TAAAT GACACTG  GCGG TTTTAA    CTT    TGA     GTT TTTAGC CAC TG  TTTGT    
       ||||||||||||||||||||||| ||||| |||| | |||||||||  ||||||||| || |||||||||||||||||| |||||||||||||||||| || | |||||||||||  ||||| | ||||| |||||||  |||| ||||||    |||    |||     ||| |||||| ||| ||  |||||     
       TTCTGAATTAATGACAAAATCAG GACTT AACT C TATACGAAA  AATCAGGGA TT AAATTTTTACGAAAGAAA CAGGGATTTAAAATTTTT AA G AAAAAATCAGG  ACTGT T ATTTA CTGTGAC  TGTC AAAATT    GAA    ATT     TAA AAATCG GTG AC  AAACG    
AAAAAAA                       T     T    G A         TC         C  T                  A                  -  C T           -A     A G     A       AC    A      AACA   TTTA   AAAAA   C      -   A  TT     TAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End