SE1820165

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10493
  • Glycine max
  • SE1820165
  • Mutator
  • M37
  • Gm20:34063955-34064254
  • TTTTTCCTA
  • AGAGTAAAATATGTTTTTGGTCCCTCTAAAATTTTCCAAATTTGGTTTTAGCCCTCCAAAAAAATTGTCCTATTTTCATCCCTCTAATTTGGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTCCT  A        T                       C               C C        -AA     C      CAT C               ACTCCAT    TA          -----------      TTAT      TATAA
        AG GTAAAATA GTTTTTGGTCCCTCTAAAATTTT CAAATTTGGTTTTAG C TCCAAAAA   TTGTC TATTTT   C CTCTAATTTGGAAAT       TTTT  TCCTCAAAGT           ATATTT    ATGGTT     
        || |||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||   ||||| ||||||   | |||||||||||||||       ||||  ||||||||||           ||||||    ||||||      
        TC CATTTTAT CAAAAACCAGGGAGATTTTAAAG GTTTAAACCAAAATC G AGGTTTTT   AACGG ATGAAA   G GAGATTAAACCTTTG       AAAA  AGGAGTTTCA           TGTAAA    TGCCAA     
ATCCTTTT  C        C                       A               A A        AAA     T      -CT A               -------    CC          CCAATATTAAT      TAAT      TATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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