SE1830169

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10497
  • Glycine max
  • SE1830169
  • hAT
  • Hat4
  • Gm07:16469804-16470425
  • AATACGCA
  • TAGGGGTGGGAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
AATACGCA              -AG             ---    TTAAAAGGCCTGAGTCTAGCCTACGATAAATTTTTGAGGCCTGAGCTTGGCCTATAGCCTATCAAAGACTTTTATTTTAGCTCGGTCTGACCTTTTTAAAAGTCTGGTCTGGCCTGAAAGCCTTTTTAAAAGCCTTCTTCACATTAATATTCCTGGAGTAGAAACGTAAAAGGAAAGTTAAAGGAAAAGGAAAACCAATAAAAATGATGAGGAATATAAAGGGGCACATGACTCACACCTAAATTATAATTAAAGTCTTACTTGATTA
        TAGGGGTGGGAATA   TCAGGTCAGACCA   GACT                                                                                                                                                                                                                                                                            
        ||||||||||||||   |||||||||||||   ||||                                                                                                                                                                                                                                                                             
        ATCCCCACCCTTAT   GTCCGGCCGGATG   CCGG                                                                                                                                                                                                                                                                            
ACGCATAA              CTG             TCC    ATGCTGGACCGGATGTATTTCGGACTGAACTTGATCGGATAAATTAATTTTCCAATCCGAGTTTGAAAAAATTTTCGGATAATTTAATTTATGTAGTCCGAATCCGAAAAATTTTTCGGAATATTCGGACTATCCGGCCGGATATATATATATATATAATAAAAAACTCATGGTTATATATGAATATAATAAAAAACCCATGTTAATTAATAAAAAACTTTGATCGTCTGAAACTAATGTGTAATGATGAGGTATTGAAGGTAAGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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