SE1830170

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10498
  • Glycine max
  • SE1830170
  • hAT
  • Hat6
  • Gm20:1587472-1588065
  • GCAATAAT
  • TCAAGGTTATCAAACTCGAGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GCAATAA   A             GA         CAGACTCGTGAGAGTTCCATAGACTCGACTCGTAGACTTAACTCATAGACTCATAAGAGTCTACTTCATATAAAAATAATAACAAAATATCTATAAATAACATACTAATTAAACATTTCAACAATATAATAAAGCAAAACAATAAATCATAAAGTTCAGAATATTTAAATAACCAAGTCTAGTAATGATACATCACCACTAGACAATAACTTGTAGAGGTCATAGTAGTGATAGGTCATTCTCATCGAGGGTTTGATGTTAT
       TCA GGTTATCAAACTC  GAGTTTACG                                                                                                                                                                                                                                                                      
       ||| |||||||||||||  |||||||||                                                                                                                                                                                                                                                                       
       GGT CCAATAGTTTGAG  CTCAATTGA                                                                                                                                                                                                                                                                      
TAATAAC   A             AG         ACTATTGAGAATACTCAAATGCTCAAGTGAACAGGAAACGCTCAACTGAGAATTCATTTGAGAAAAAAATCATCTGAGACCCATTTGAGATATTTGAGATTCATTTGAACCATCTAAGAACTCAAATGGTGGCTCAGTTGCTCAATCGTTCAATTTTTTTAATCTGGTTTTACATTCAGTAAAAACTAACAAAAGATAGACAAATCGTAAATTGTATGTAAGTAAATCGCACAATAAGAGTTTATGTTTTAAGAGTGGAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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