Plant MITE

SE1830171

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10499
Glycine max
SE1830171
hAT
Hat3
Gm16:31565535-31565726
GTAGGGAT
ATCTATGAAGCAC

Secondary structure and sequence

TSD TIR

5'

3'

GTAGGG             -       TCA  CCTT   C     C  TGTCCGACACGCGTCCGTGTCAGTGTCCGACACCGACACGACACCCGTATTA
      ATCTATGAAGCAC GGACACT   GC    TGC GTGTC GG                                                    
      ||||||||||||| |||||||   ||    ||| ||||| ||                                                    C
      TGGATACTTCGTG CTGTGGC   TG    TGC TGTGG CC                                                    
TAGGGA             A       ---  ----   C     -  TGTGCTGTGCCTATGCCTGTGCACCTGTGGACATTACAGGTTTTATATCTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830171

GTAGGGATCTATGAAGCACGGACACTTCAGCCCTTTGCCGTGTCCGGTGTCCGACACGCGTCCGTGTCAGTGTCCGACACCGACACGACACCCGTATTACGTTCTATATTTTGGACATTACAGGTGTCCACGTGTCCGTATCCGTGTCGTGTCCGGTGTCCGTGTCGGTGTCAGTGCTTCATAGGTAGGGAT

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