SE1820174

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10502
  • Glycine max
  • SE1820174
  • Mutator
  • M1
  • Gm05:33900360-33900790
  • CAAGTTCTT
  • AAGTTCTTGGGTGTTGCTAGGTGCACCCAGCATTATTGTTGGTGCACCCAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
C   TT      -                                   C      CTTAAGG       A     ATA    -  A  CGTAAGCCATTTAAGTTGATCCGTAAAAGTCTTACAGACCAGCTTGATCCGTAAAATTTTTACGGATCAACTTGATCCGTAAGCTTTTTACGGATCAAGTTGATCCGTATTGTTCCGTAAAAAGTTTACG
 AAG  CTTGGG TGTTGCTAGGTGCACCCAGCATTATTGTTGGTGCA CCAGCA       TGAAATG TAAAA   TCCT TG TC                                                                                                                                  
 |||  |||||| ||||||||||||||||||||||||||||||||||| ||||||       ||||||| |||||   |||| || ||                                                                                                                                   
 TTC  GAACCC ACAACGATCCACGTGGGTCGTAATAATGACCACGT GGTCGT       ATTTTAT ATTTT   AGGG TA TG                                                                                                                                  
    TT      C                                   A      -AAAATA       G     AAC    A  -  AAAAAAACATAAACACTACCCACACACACTCCCACCAGGCATTTAGCATACCTAGTTTAACTAGGCATTCCAACTATGCCTAGTTGAACTAGGCATTCAGAAAATGCCTTGTTATGCCTAGTTGAACTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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