SE1850178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10506
  • Glycine max
  • SE1850178
  • PIF/harbinger
  • To3
  • Gm10:27777378-27777797
  • TAA
  • AGAGTGTGTTTGGATGGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                   --------  -   TAAAATTTTAAGAAATTTTAAATTCTAAGAATTTCAAATACTTCAATTGAAATTCTTTTATTTTCAAAATTTTGTGTTTGGATAAAAAAAAATTAAGTTAGGAATTTTCAACATTTTAAGGATTTCGGGAACTTTAAGGTAGAAGAGATGATGAAAGTTAATAAGGAAATACACGAAGG
  AGAGTGTGTTTGGATGGGG        GA ATT                                                                                                                                                                                   
  |||||||||||||||||||        || |||                                                                                                                                                                                   T
  TCTCATACAAACCTATCTC        GA TCT                                                                                                                                                                                   
AA                   TTAAAATT  C   TTTCATTAAATAGACTCTTAAACTTAAAAACATTAGATCTTAAGTAACAAACTACAAAAAAAGTTCTTAAATTTAAAAACCTTAAAATTTTGTCTTAAAATTTGTTTTTTCGCATCTTAAAGTTAAAGGAAGATTTTCCAATCTTTAACTTTAAGAAAAAATATTTTATTAGAAGATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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