Plant MITE

SE1810180

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10508
Glycine max
SE1810180
Tc1/Mariner
St1
Gm07:15319332-15319630
TA
TACTCCCTTTGCTCCTATTTATAAGACCCAA

Secondary structure and sequence

TSD TIR

5'

3'

           C      T            ---    GAATTGGTGCTTGTTCATTTTTATAAGACTCAATCTATAACATTTCTTGCATTAATTATTTTTAGACTAGAAATACCCCTCATTAAAAGATGAGAGAGAATGTATGGACAAAC
TACTCCCTTTG TCCTAT TATAAGACCCAA   GTTT                                                                                                                 
||||||||||| |||||| ||||||||||||   ||||                                                                                                                  
ATGAGGGAGAT AGGATA ATATTCTGGGTT   GGAT                                                                                                                 
           A      T            AAT    TAAGTTATCCTAATTCTTTTCATCAATTAAATCAACTACTATTATTTAAACAGAATTTAAATATTTAAAAAGGTTTTGATAGGAACAGTAATTATGAAGAGAGAGAAGATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1810180

TACTCCCTTTGCTCCTATTTATAAGACCCAAGTTTGAATTGGTGCTTGTTCATTTTTATAAGACTCAATCTATAACATTTCTTGCATTAATTATTTTTAGACTAGAAATACCCCTCATTAAAAGATGAGAGAGAATGTATGGACAAACAATTAGAAGAGAGAGAAGTATTAATGACAAGGATAGTTTTGGAAAAATTTATAAATTTAAGACAAATTTATTATCATCAACTAAATTAACTACTTTTCTTAATCCTATTGAATTAGGTAATTGGGTCTTATATATAGGAATAGAGGGAGTA

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