SE1820181

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10509
  • Glycine max
  • SE1820181
  • Mutator
  • M1
  • Gm03:30479130-30479522
  • AATTACCAG
  • GGGTGTTGCTAGGTGCACCTAGCATTATTGTTGGTGCACCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
AATTACCAG     T                                    ACACTTAAGG      GA     A        ATTCGTAAGCCAT    G    ------------------------ AT       --C    C              C   AGCCTTTTACTGATCAAGTTGATTCATAAGACTTCTATGGATCAAGTTGA
         GGGTG TGCTAGGTGCACCTAGCATTATTGTTGGTGCACCTA          TGAAAT  CGAAA TATCCTTG             TTAA TTGA                        T  GTAGAAG   CTTA GGATCAACTTGATC GTA                                                  
         ||||| ||||||||||||||||||||||||||||||||||||          ||||||  ||||| ||||||||             |||| ||||                        |  |||||||   |||| |||||||||||||| |||                                                  T
         CCCAC ACGATCCACGTGGGTCGTAATAACGACCACGTGGGT          ATTTTA  GTTTT ATAGGGAC             AAGC GTAA                        A  GGCATTT   ATGC CTAGTTCAACTAGG CAT                                                  
GACCATTAA     T                                    -CATAAAAAA      TG     G        ------ATGAAAA    -    ACACTACCCACACACACTCTCACC --       AGC    -              -   TCCAACTATGCCTAGTTGAACTAGGCATTTAGAAAATGCCTTATTATGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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