SE1820182

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10510
  • Glycine max
  • SE1820182
  • Mutator
  • M40
  • Gm10:37674946-37675143
  • TTATTGTTT
  • GGTCAAAACTTATATACAGTTCCTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTGTTT  TCA       T              GTTCTTTTGG         G            A       C GCCA    C  C  AATAA    CTGC
         GG   AAACTTA ATACAGTTCCTTAG          TGCTTTTCT CAATTAGAATTG AGTTTCA C    TAAT TA GT     ACTT    
         ||   ||||||| ||||||||||||||          ||||||||| |||||||||||| ||||||| |    |||| || ||     ||||     
         CC   TTTGAAT TATGTCAAGGAATC          ACGAAAAGA GTTAGTTTTAAC TCAAAGT G    ATTA AT CA     TGAA    
TTTGTTATT  TAC       C              ---------A         A            C       T ACTC    A  A  ---AC    ATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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