SE1820184

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10512
  • Glycine max
  • SE1820184
  • Mutator
  • M10
  • Gm07:1400502-1400926
  • CTTTCTCTT
  • GGGACATGCTAGGTGCACCCAGCAACATTGCTGGTGCACCCAGCAATTAGGTGAATGGGCAAAACTGCCCTTGTATTAAAAAAATAATTCCTTCTTTCGGAAGAAGGTTCTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTCTCTT                                                                C         A         -     C                        -----------------------       -   -      TTA  A     ACCTTCTTCCGAAATAATAAATTGTTCTACCGGAAGAACCTTCTTCTGGAA
         GGGACATGCTAGGTGCACCCAGCAACATTGCTGGTGCACCCAGCAATTAGGTGAATGGGCAAAA TGCCCTTGT TTAAAAAAA TAATT CTTCTTTCGGAAGAAGGTTCTTCC                       GGTAGAA CAA TTTATT   TT GAAGA                                                   
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||                       ||||||| ||| ||||||   || |||||                                                    
         CCCTGTACGATCTACGTGGGTCGTTGTAACGACCACGTGGGTCGTTAATCCACTTACCCGTTTT ACGGGAACG AATTTTTTT ATTAA GAAGAAAGCCTTCTTCCAAGAAGG                       CCTTCTT GAA AAGGCC   TT GAAAA                                                   
TTCTCTTTC                                                                A         C         T     A                        CCTTCTTATTAAACACAAGATAA       A   A      ---  C     GCCTTCTTGGAAGAAGGCCTTCGAAAGTCCTTCTTCCAAGAAGGCTTTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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