SE1850188

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10516
  • Glycine max
  • SE1850188
  • PIF/harbinger
  • To16
  • Gm02:13629425-13629670
  • TAA
  • AGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  A  CTATTT    C     CTCTGTAAGTA          T             G     -           C    -                            CTTCTATA      CTCT
  AG CC      GGAT AACTT           CTTATAGGAG AGAAAATAAGAAG TAAAA GGATTGAGCTT TTCC ATAAGCTAAAATCAGCTTATGCACTTAA        GAAGTT    
  || ||      |||| |||||           |||||||||| ||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||        ||||||    C
  TC GG      TCTA TTGAA           GAATATCCTC TCTTTTATTTTTC ATTTT CTTAACTTGAA AAGG TATTCGATTTTAGTTGAATACGTGAATT        TTTCAA    
AA  C  TACAAT    T     --------AAA          T             G     A           -    C                            CAAAAACC      TTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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