Plant MITE

SE1810190

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10518
Glycine max
SE1810190
Tc1/Mariner
St5
Gm16:14342448-14342849
TA
TACTACCTTCAGTCCTTTATAAGAAACAA

Secondary structure and sequence

TSD TIR

5'

3'

        T   -    --T            AAAGTAGTATTTTTTT  TC   A    AA     ----  A   CCACTTTCAAATGTTTTAATGGCTAGTTTCCTTTTATACCCTTGATTTATTGTACAGTTATCAGTGAGATATCACTCATTTCCCATGAAAGTGGATGCATTTAATGAGCTATTAACAATATAACTCATTCTCATTGGT
TACTACCT CAG TCCT   TATAAGAAACAA                GG  CTA TTGT  GAAAC    AT TGA                                                                                                                                          
|||||||| ||| ||||   ||||||||||||                ||  ||| ||||  |||||    || |||                                                                                                                                          G
ATGATGGA GTC AGGA   ATATTCTTTGTT                TA  TGG GTTA  AATAG    GG TAT                                                                                                                                          
        -   T    TAT            ----------------  --   -    --     TTTT  T   TTTCATCAATTTACTAACTTAAAATTAAACAGTATTTAAATTTAAAAGAAGGTTTTTATAGATGTTTTAATTAACCAAATTCACCACCAATCTATATTACTGTGAGTGTGATGAGTATTAGATTCCTTATGAAAAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1810190

TACTACCTTCAGTCCTTTATAAGAAACAAAAAGTAGTATTTTTTTGGTCCTAATTGTAAGAAACATATGACCACTTTCAAATGTTTTAATGGCTAGTTTCCTTTTATACCCTTGATTTATTGTACAGTTATCAGTGAGATATCACTCATTTCCCATGAAAGTGGATGCATTTAATGAGCTATTAACAATATAACTCATTCTCATTGGTGGAAAAAAGTATTCCTTAGATTATGAGTAGTGTGAGTGTCATTATATCTAACCACCACTTAAACCAATTAATTTTGTAGATATTTTTGGAAGAAAATTTAAATTTATGACAAATTAAAATTCAATCATTTAACTACTTTTATTGGTTTTGATAAATTGGGTATTTGTTTCTTATATATAGGATCTGAGGTAGTA

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