SE1830192

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10520
  • Glycine max
  • SE1830192
  • hAT
  • Hat4
  • Gm11:18624179-18624854
  • GTGTTGCC
  • GTTGCCTAGGGGTGGGAATAGGCCAGGCCGATCTACAGGGGCCTACGACCTGGCCTACATAAAGTCTGGCCTGAACTGGCCTATT

Secondary structure and sequence

TSD    TIR
5'



3'
GT  T  -                        -   CTA    --------     AC  -           ---------------TAA           AAC         TAATTA       -------A       ---   -             ATTAAATTAAATAGAC    -     ------------    ATTAAAAAGCCTTATAAGCTTGATAGGCCGGCCTATATATATGTATATATATTTATATTATTTTTTGGGTACCAATATATACTTATATTATTTTTTGGGTACAATTAATTTTTTTTAAAACTATCAAACTTTGATTACACATTACTGCTCCATAACTTCTATTCCTATAATCAAG
  GT GC CTAGGGGTGGGAATAGGCCAGGCC GAT   CAGG        GGCCT  GA CCTGGCCTACA                  AGTCTGGCCTG   TGGCCTATT      AAAGGTT        GGCTCAG   GAT TTTTTAAAAGCCT                CAGG CTTAG            GCTT                                                                                                                                                                               
  || || |||||||||||||||||||||||| |||   ||||        |||||  || |||||||||||                  |||||||||||   |||||||||      |||||||        |||||||   ||| |||||||||||||                |||| |||||            ||||                                                                                                                                                                               T
  CG TG GATCTCCACCCTTATCCGGTCCGG CTG   GTCC        CCGGA  CT GGATCGGATGT                  TCAGACCGGAT   ATCGGATAG      TTTCCGA        CCGAGTC   CTG AAAAATTTTCGGA                TCGG CTGGA            TTTT                                                                                                                                                                               
 C  T  T                        T   ---    GAAATTTT     --  C           TACTTAAAAACTCTGGAC           ---         ------       AAATAAAA       GGA   G             ----------------    A     CTATCAGAAAAA    CGGAAAAATTTTCAGAAGAAATGTAATTTAGAAATTATAGGGAAACGAGAACCTCATCCGTGCATTATCCTTTCAATTTCCTTTTCCTTTGTAATTGTCTTTATCCTTTCGGTTATTTTTGTTACTTTTTATATTTCCCTGTGTACTGAGTGTGGATTTAACATTAATTTCAGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End