SE1830196

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10524
  • Glycine max
  • SE1830196
  • hAT
  • Hat4
  • Gm06:24834458-24835058
  • ATCAGAGC
  • TAGGGGTGGGAATAGGCCAGGCAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCAGAGC                      -    CTAC         C A          -------ATAAA     GCCTGAACTGACCTATTTAATTAAAAAGTTAGGCTCAGACTTTTTTAAAATCCTATTAAATTAAACAGATCAGGCTTAGGCTTATTAAAAAGCCTTATAAGCCTGATAGGCCGGCCTATATATATATATATATACTTATATTATTTTTTGGATACAATTAATTTTTTTCTGAAACTATCAGACTTTGATTACACATTACTGCTCTATAACTTCTATTCCTATAATCA
        TAGGGGTGGGAATAGGCCAGGC AGGT    AGGGGCCTA G TCTGGCCTAC            GCTTG                                                                                                                                                                                                                                   
        |||||||||||||||||||||| ||||    ||||||||| | ||||||||||            |||||                                                                                                                                                                                                                                    
        ATCCCTACCCTTATCCGGTCCG TTCG    TTTCCGGAT C GGATCGGATG            TCCGG                                                                                                                                                                                                                                   
CGAGAATA                      G    AAAC         T -          CTACTTAGAAAC     ACTCGGACCGGATATCGGATAGTTTCCGAAAATAAAACCGAGCCGGACTGGAAAAATTTACGGACCGGATCGGACTATCGGAAAAATTTTCGGAAGAAGAGTTATTTATAAATTATAAAATACCTCATCCTTGTATTATCCTTTCAATTTCTTTTTCCTTTCAGTTAGTTTTATTACTCCTTATATTTTTCCTTGTACTGAGTGTGGATTTAACATTAATTTCAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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