Plant MITE

SE1820198

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10526
Glycine max
SE1820198
Mutator
M42
Gm13:10245613-10246170
TAGAATAAA
AGGGTAAAATATGTTTGAAATCCCTGTAAAATTTGAAAAGTATTAATTTCGTCCTTATAAAATATTTCATATTAATTTGGTCCCTGTAAAAATAAAACATTTTTTTTGGCCCTCAGTGGTAACTCAGTTAGAC

Secondary structure and sequence

TSD TIR

5'

3'

TAGAATAA                 AAA   C                                       A    A        T     C             -CAT         C            C  A       -----A   -   TAATGTGGATAACGGACTTAATTACTTTCTCTTCCTACCTAACCAAGCACACTCAAAAGACACCAGAGCCCATTGTTGTTTCATCTTCCCCCATAATCTCATTAAAAAGTGCGAGAAAATCGCCCAGG
        AGGGTAAAATATGTTTG   TCC TGTAAAATTTGAAAAGTATTAATTTCGTCCTTATAAAAT TTTC TATTAATT GGTCC TGTAAAAATAAAA    TTTTTTTGG CCTCAGTGGTAA TC GTTAGAC      GTT CAC                                                                                                                                
        |||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||    ||||||||| |||||||||||| || |||||||      ||| |||                                                                                                                                 
        TCCCATTTTATACAAAT   AGG ACATTTTAAACTTTTTATAATTAAAGCAGGAGTATTTTA AAAG ATAATTAA CCAGG ACATTTTTATTTT    AAAAAAACC GGAGTTACCATT AG CAATCTG      TGC CTG                                                                                                                                
AAATAAGA                 CCC   A                                       A    C        -     A             CTAT         A            A  G       CCATTC   A   ATTGTTTTAATGTGCACATTAACCTAATGTTTACTTAATTTGATAAAAACCTCCGATTTTGGGAGGTTTTACTTTATTTGTTAAAGACCACCGATTTTTGAGGGTATTTAACCTTAAAAGGGAGTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820198

TAGAATAAAGGGTAAAATATGTTTGAAATCCCTGTAAAATTTGAAAAGTATTAATTTCGTCCTTATAAAATATTTCATATTAATTTGGTCCCTGTAAAAATAAAACATTTTTTTTGGCCCTCAGTGGTAACTCAGTTAGACAGTTCACTAATGTGGATAACGGACTTAATTACTTTCTCTTCCTACCTAACCAAGCACACTCAAAAGACACCAGAGCCCATTGTTGTTTCATCTTCCCCCATAATCTCATTAAAAAGTGCGAGAAAATCGCCCAGGAAGTGAGGGAAAATTCCAATTTATGGGAGTTTTTAGCCACCAGAAATTGTTTATTTCATTTTGGAGGGTTTTAGCCTCCAAAAATAGTTTAATTCATTTGTAATCCAATTACACGTGTAATTTTGTTAGTCACGTCTTACCGTCTAACGGAATTACCATTGAGGACCAAAAAAATATCTTTTATTTTTACAAGGACCAATTAATACGAAAAATTTTATGAGGACGAAATTAATATTTTTCAAATTTTACAAGGACCCTAAACATATTTTACCCTAGAATAAA

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