SE1820201

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10529
  • Glycine max
  • SE1820201
  • Mutator
  • M13
  • Gm17:11814856-11815304
  • TAAGGCAAA
  • GGCAAAATTGCAAATTTAGTTGCCTATTTGTCTTAGAATTCTATTTTGATCCCCCTATAATTTAATTAAGGAATTTAGTCCCCCAATTTTTTTGTAATTCCATTATTTCAGTCCTGACATTAATTTTGGAGGTTGACTATCATGTGTTGTACTTTTATTAGACATTGACTGTCATGTGTTACGCGTTTATTGAACATTAATT

Secondary structure and sequence

TSD    TIR
5'



3'
      TAA  C       C      A   -GC        C        CT      A     C            A G            C  AT            C             -    CA    TT     -----------------GG                  AC       A   A      G            CG       ------          TCGTG
         GG AAAATTG AAATTT GTT   CTATTTGT TTAGAATT  ATTTTG TCCCC TATAATTTAATT A GAATTTAGTCCC CA  TTTTTTGTAATT CATTATTTCAGTC CTGA  TTAA  TTGGA                   TTGACTATCATGTGTTGT  TTTTATT GAC TTGACT TCATGTGTTACG  TTTATTG      AACATTAATT     
         || ||||||| |||||| |||   |||||||| ||||||||  |||||| ||||| |||||||||||| | |||||||||||| ||  |||||||||||| ||||||||||||| ||||  ||||  |||||                   ||||||||||||||||||  ||||||| ||| |||||| ||||||||||||  |||||||      ||||||||||      
         CT TTTTAAT TTTAAA CAG   GATAAACA AGTCTTAA  TAAAAC AGGGG ATATTAAATTAA T CTTAAATCAGGG GT  AAAAAACATTAA GTAATAAAGTCAG GGTT  GGTT  AACCT                   AACTGATGGTGCATAACA  AAAATAA CTG AACTGA AGTGTATAGTGC  AAATAAC      TTGTAATTAA     
AATTAAATA  T       A      C   GAA        A        AT      C     A            A G            A  --            A             T    AG    TT     GAAAACAATTAATGAATGG                  CA       C   C      A            TA       CTCCAA          TTCAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End