Plant MITE

SE1850204

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10532
Glycine max
SE1850204
PIF/harbinger
To16
Gm16:834660-834899
TTA
AGGCTCTGCTTAGATAAACTTCTCTAT

Secondary structure and sequence

TSD TIR

5'

3'

 TT     C  C   G     C        TAACACTTACAG  AAA       AA    T     AA            G     A            -----  A    A     AT     CTCTCTT
   AGGCT TG TTA ATAAA TTCTCTAT            GA   GAAAATA  AAGG AAAAT  ATTGAGCTTTTT CATAA CTAAAATCAACT     GC CTTA CTTTT  AGAAG       
   ||||| || ||| ||||| ||||||||            ||   |||||||  |||| |||||  |||||||||||| ||||| ||||||||||||     || |||| |||||  |||||        
   TCCGG AC AAT TATTT AAGAGGTA            CT   CTTTTAT  TTCC TTTTA  TAACTCGGAAAG GTATT GATTTTAGTTGA     TG GAAT GAAAA  TTTTC       
AAT     A  A   A     A        ------------  --C       CC    C     CG            -     C            ATAGG  -    C     CC     AATTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1850204

TTAGGCTCTGCTTAGATAAACTTCTCTATTAACACTTACAGGAAAAGAAAATAAAAAGGTAAAATAAATTGAGCTTTTTGCATAAACTAAAATCAACTGCACTTAACTTTTATAGAAGCTCTCTTCATTTAACTTTTCCAAAAGCTAAGGTGGATAAGTTGATTTTAGCTTATGGAAAGGCTCAATGCATTTTCCCTTCCTATTTTCCTCATGGAGAAATTTATATAAACAAGGCCTTAA

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