Plant MITE

SE1850205

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10533
Glycine max
SE1850205
PIF/harbinger
To22
Gm02:51631157-51631431
TTA
AGGGTAAATTATGTTTTTAGTTCCTCTAAAATTTGAAGAGTTTGGTTTTAGTCCCTCTA

Secondary structure and sequence

TSD TIR

5'

3'

TTAGCATT        T         A               GA                       AATTTTGTT   TGTTTTTGGTCCCTCTAATTTTGAAATGCACCACTTTTGGTCCTTCAGGTGGTTTAGTTAACG
        AGGGTAAA TATGTTTTT GTTCCTCTAAAATTT  AGAGTTTGGTTTTAGTCCCTCTA         GCC                                                               
        |||||||| ||||||||| |||||||||||||||  |||||||||||||||||||||||         |||                                                                
        TCCCGTTT ATACAAAAA CAAGGAGATTTTAAA  TTTCAAGTCAAAATCAGGGAGAT         TAA                                                               
ATTACAAT        T         C               AC                       ---------   AACTTTACGTGGTGAAAAACAGGAGGTTCACGATAGATGTAGTGAAAAGTAGAGAGATATTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1850205

TTAGCATTAGGGTAAATTATGTTTTTAGTTCCTCTAAAATTTGAAGAGTTTGGTTTTAGTCCCTCTAAATTTTGTTGCCTGTTTTTGGTCCCTCTAATTTTGAAATGCACCACTTTTGGTCCTTCAGGTGGTTTAGTTAACGCTTTATAGAGAGATGAAAAGTGATGTAGATAGCACTTGGAGGACAAAAAGTGGTGCATTTCAAAATTAGAGGGACTAAAACTGAACTTTCAAAATTTTAGAGGAACCAAAAACATATTTTGCCCTTAACATTA

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