SE1830206

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10534
  • Glycine max
  • SE1830206
  • hAT
  • Hat4
  • Gm17:35387100-35387738
  • TTCTTAAT
  • TAGGGGTGGGAATAGGCCAAGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTTAAT                   A   -        -   TGAAAGGCCTGAGCCTAGCCTACGATGAATCTTTGAGGCCTGAGTCTGGCCTATAACCTATCAAAGGCTTTTATTTTGGCTCGGCCTAGCCTTTTTAAAAGCCTGGCTTGACCTGATAGCCTTTTTAAAAGTCTTCTTCACAATAAATATTTAATATTTTATGGAGTAGGAACGTAATAGGAAAGTTAAAAAAAAAGTCAATCAAAATAATGAGAAATATAAAAGGGCACATGACTCACACCTAAATTGTAATTAAAGTCCTTGATTATAGGAATA
        TAGGGGTGGGAATAGGCCA GCC AGGTCAGG CTT                                                                                                                                                                                                                                                                                    
        ||||||||||||||||||| ||| |||||||| |||                                                                                                                                                                                                                                                                                    A
        ATCCCCACCCTTATCCGGT CGG CGGATGTC CCG                                                                                                                                                                                                                                                                                    
TAATTCTT                   C   C        C   GATGCTGGACCGGATGTATTTCGGACTGGACTTGATCGGATAAATTAATTTTATAATCCGAGTTTGAAAAAATTTTCGGATAATTTAATTTATCTGATCCGAATCCGAATAATTTTTCGGAATATTCGGACTATCCGGTTGGATATATATATATATATATATATATATATATATATATATAATAAAAAACCCATGGTTATATATTATAATAAAAAACCTATGTTAATTAAAAAAATTTGATAGTCTGAAACTAATGTGTAATAACGAGGTATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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