SE1820209

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10537
  • Glycine max
  • SE1820209
  • Mutator
  • M13
  • Gm15:8456659-8457127
  • TATCTTAAA
  • AGGCAAAATTGCAAATTTGGTTCCCAATTTGTCTCAGAATTCGATTTTGGTC

Secondary structure and sequence

TSD    TIR
5'



3'
TATCTTAA                         -A               C          CCCCTA                      C     A              C                    C       A     CAT         C   CCTT                           A        A      C   TGA      G   G     CGTTAATTAG
        AGGCAAAATTGCAAATTTGGTTCCC  ATTTGTCTCAGAATT GATTTTGGTC      TAATTTAATTCACGAATTTAGT CCTTA TTTTTTGCAATCTC TTATTTCAGTCCTCAATCCC GAAATTG ACGTT   TGTTAATTG TTA    GACCGTTACGTGTCGCGCTTTTATTGG CGTTGACC CCACGT TTG   TTTTAT GGA GTTGA          
        |||||||||||||||||||||||||  ||||||||||||||| ||||||||||      |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||   ||||||||| |||    ||||||||||||||||||||||||||| |||||||| |||||| |||   |||||| ||| |||||           
        TCCGTTTTAACGTTTAAACCAGGGG  TAAACAGAGTCTTAA CTAAAACCAG      ATTAAATTAAGTGCTTAAATCA GGGGT AAAAAACGTTAGAG AATAAAGTCAGGGGTTAGGG CTTTAAC TGCAA   ACAATTAAC AGT    CTGGTAGTGCACAGCGCGAAAATAACC GCAACTGG GGTGTA AGT   AAAATA CCT CAATT          
AAATTCTA                         GA               A          ------                      A     C              C                    -       C     CTC         -   ----                           C        C      C   GTG      A   G     AAAACACGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End