Plant MITE

SE1810211

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10539
Glycine max
SE1810211
Tc1/Mariner
St10
Gm18:54708526-54708795
TA
TACTCCCTCC

Secondary structure and sequence

TSD TIR

5'

3'

     C    A    -     AATAGTCATACTAGGTTCTTTTACACAGACCAAGAAAAACTAATAAATAGATGAAACAAAATATTACTTTTTACAAAATTAACCTTATATCATCATTAATTCATTCAATAATTT
TACTC CTCC TCCC AAAAT                                                                                                                  
||||| |||| |||| |||||                                                                                                                  T
ATGAG GAGG AGGG AATAT                                                                                                                  
     T    C    T     TAACAACATATTTTCTTTTTTTTAACAGGGTTTTATTAACAGTAAAATCAAAAAGTTACATTGTAATTAATACAGAAAGGTGAATATAGGGAATATTATAATTACCACCTGTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1810211

TACTCCCTCCATCCCAAAATAATAGTCATACTAGGTTCTTTTACACAGACCAAGAAAAACTAATAAATAGATGAAACAAAATATTACTTTTTACAAAATTAACCTTATATCATCATTAATTCATTCAATAATTTTGTTGTCCACCATTAATATTATAAGGGATATAAGTGGAAAGACATAATTAATGTTACATTGAAAAACTAAAATGACAATTATTTTGGGACAATTTTTTTTCTTTTATACAACAATTATAATGGGACGGAGTGAGTA

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