SE1820212

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10540
  • Glycine max
  • SE1820212
  • Mutator
  • M1
  • Gm11:36691771-36692073
  • TATGGGTGG
  • GGAGTGCTGCTAGGTGCAACCAGCATTATTGCTGGTGCACCGAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATGGGTG      C           A                      G A  CTAACCA      GACAGAAATAC    TATGGATCAAGTTAATCCGTAAGTTAATTTTTAAGACTTACAGATCAACTTGATCTGTAAGTCTTTTACGGATCA
        GGAGTG TGCTAGGTGCA CCAGCATTATTGCTGGTGCACC A CA       TGAAAA           CCCT                                                                           
        |||||| ||||||||||| |||||||||||||||||||||| | ||       ||||||           ||||                                                                           A
        TCTCAC ACGATCCACGT GGTCGTAATAACGACCACGTGG T GT       ACTTTT           CCGT                                                                           
GGTGGGTA      A           G                      G C  --AAGAA      ----------A    TTTGACGGGGATGATTAAAGAAGGGAATACCTAGTTGAACTAGGTATTCAGAATTTTTAGTTGAATGCTTAGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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