SE1820221

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10549
  • Glycine max
  • SE1820221
  • Mutator
  • M1
  • Gm16:27920977-27921367
  • TTTATTTAA
  • AAGGGTGTTGCTAGGTGCACCCAACATTATTGCTAGTGCACCCAACATCTTTAAAAAATATCAAAATTGTCTCTGTGTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTT                       A          A             CT    ------------         AAA   TC     --       TT    TTGTGATAGGTGTGCGTGAGGGTGGTCCGTAAATCGTACGGATCAACTTGATCCGTAAGGTTGATACGGATCAAGTTAATCCGTATGTTGATATTA
       AAGGGTGTTGCTAGGTGCACCCA CATTATTGCT GTGCACCCAACAT  TTAA            AAAATATCA   TTG  TCTGT  GTTTTTT  GCAT                                                                                                
       ||||||||||||||||||||||| |||||||||| |||||||||||||  ||||            |||||||||   |||  |||||  |||||||  ||||                                                                                                A
       TTCCCACAACGATCCACGTGGGT GTAATAACGA CACGTGGGTTGTG  AATT            TTTTATGGT   AAC  AGACA  CGGAAAA  TTCT                                                                                                
AATTTAT                       C          C             --    CTACTTTACTGC         ---   -T     TC       --    ACTAGGCATTCAGAAAATACCTAGTTGAACTAGGTATCTTCGGAATGCCTAGTTGAACTAGGCATTTTCTGAATGCCTAGTTCAACTAGACATACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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