SE1820222

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10550
  • Glycine max
  • SE1820222
  • Mutator
  • M32
  • Gm17:30127143-30127515
  • ATTGAGAAG
  • AGGCTTAAATATGTTTTTGATCCCTAATAAATACCCGATTTTTGTGTTTGCTCCCTAATAAATTTTTATTTTCTGTTGAGTCCCTATTAAAATTATATTTTTATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 ATTGAGA       A                         C        T                        A  TTC  T      C   T      T   T    A    TCAA           TGTT                   AA       -          CTA      TAACAAA
        AGGCTTA ATATGTTTTTGATCCCTAATAAATA CCGATTTT GTGTTTGCTCCCTAATAAATTTTT TT   TG TGAGTC CTA TAAAAT ATA TTTT TTTT    CCTTGATATTT    TTAGTCCCTGATAAATTAG  AAATTTT TGTTTGCTTC   ATAAAT       
        ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||   || |||||| ||| |||||| ||| |||| ||||    |||||||||||    |||||||||||||||||||  ||||||| ||||||||||   ||||||       T
        TCCGAAT TATACAAAAACTAGGGATTGTTTAT GGTTAAAA CGTAAACGAGGGATTATTTAAAAA AA   AC ACTCAG GAT ATTTTG TGT AAAA AAAA    GGAACTGTGAA    AATCGGGGATTATTTAATT  TTTAAAA ACAAACGAGG   TATTTA       
AACAGTTA       A                         A        -                        C  TAC  T      A   T      T   T    -    -CCA           TAAC                   -G       C          TAC      TAAAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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