SE1820223

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10551
  • Glycine max
  • SE1820223
  • Mutator
  • M1
  • Gm14:21885860-21886380
  • AAACAAAAA
  • GAGTGTTGCTAGGTGCACCCAGCATTATTGTTGGTGCACCCAGCATTTTTTTAAAATACCAAAATTGTCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAACAAAAA A                                              -TTT      AC     T       ----A      ------ T     TTGTCATGGTGTGTGTGAGGGTGGTAAGTAAATCATACGGATCAAGTTGATCCGTAAGGTTGATACGGATCAAGTTGATCCGTATGTTGATATTAAGCATACAGATCAACTTGATTTGTAAGACTTCTACGGATCAAGTTGATCCGTATTGTTCCATAAA
         G GTGTTGCTAGGTGCACCCAGCATTATTGTTGGTGCACCCAGCATTT    TAAAAT  CAAAA TGTCCTT     CACTTT      T CGCAT                                                                                                                                                                
         | ||||||||||||||||||||||||||||||||||||||||||||||    ||||||  ||||| |||||||     ||||||      | |||||                                                                                                                                                                A
         C CATAACGATCCACGTGGGTCGTAATAACGACCACGTGGGTTGTGAA    ATTTTA  GTTTT ATGGGAA     CATTCG      T CAACT                                                                                                                                                                
AAAAACAAA C                                              TTCC      CT     T       CTAGA      GTAAAT -     AGGCATTTTCCGAATGCCTAGTTCAACTAGGTATTCGGAAAATGCCTAGTTGAACTAGACATTCCGAAGATACCTAGTTCAACTAAGCATAACAAGGAATTTTCTAAATGTTTAGTTGAACTAGACATTCGGAAAATGCTTAGTTGAACTAGGCATTCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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