SE1850225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10553
  • Glycine max
  • SE1850225
  • PIF/harbinger
  • To9
  • Gm01:5733391-5733658
  • TAA
  • AGGGCCTGTTTGGGTATAAGCTTCTCTAGAAGCACTTCTAGAAGAAGAAAAAAATGAAATGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                TA       C                         ------------AA          ATTCTC   T   T                TAAC      G    T TCAT      -TTT   AG
  AGGGCCTGTTTGGGTA  AGCTTCT TAGAAGCACTTCTAGAAGAAGAAAA              ATGAAATGAG      CAT AGC AAAATGAGTTTTCCAT    TAATTT TAGA G    CTCATC    TAG  
  ||||||||||||||||  ||||||| |||||||||||||||||||||||||              ||||||||||      ||| ||| ||||||||||||||||    |||||| |||| |    ||||||    |||  A
  TCCCGGACAAACCCAT  TCGAAGA ATCTTCGTGAAGATTTTCTTCTTTT              TACTTTACTC      GTA TCG TTTTATTTGAGAGGTA    ATTAAA ATCT C    GAGTGG    ATC  
AA                --       A                         ATTCTTCTTTTTTC          GAAAAA   T   T                CTCA      A    T ----      TTAT   GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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