SE1820226

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10554
  • Glycine max
  • SE1820226
  • Mutator
  • M44
  • Gm20:3533176-3533625
  • TTTTATCTT
  • TTGTGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
         TTTTATC   T    GTAA   TT    TC   ACAT    T             ---          C ---    -TTT      TTAAAATCTCTAAACTATTTTTTTTTTAAATTTGGCTTTTAGTTCCTAAGCAAAAACTTGACCAGTCAAGATCCATCAACTTTTATTTATTAAGATTTTTAGTCACTAAAATTTTGAAAAATTTGATTTTTAGTTTCTAAA
                TTG GTTC    AGT  TTAA  CTA    TTTT AAATTCAATTTTT   AGTCTTTAAA A   AAAA    GTTGAG                                                                                                                                             
                ||| ||||    |||  ||||  |||    |||| |||||||||||||   |||||||||| |   ||||    ||||||                                                                                                                                              
                GAC TAAG    TCA  AATT  GAT    AGAA TTTAAGTTAAAAA   AGGATTTGTT T   AACT    AGTTCT                                                                                                                                             
TTCTATTTTCCCAATT   T    --AA   CT    -T   ----    C             ATT          - ACA    AAAG      AGGGAGCTAAAATAGGTTATTCTAAACACTAGGGTTTTGAAAACAAACTGCTGATCAGCTCTAGGAATATGAAAATTTTTTAAGTTGAAAATCAGGAATTTATTTTTAAACTTAAGTAATAAAAATAAATAAATAAATCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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