SE1820228

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10556
  • Glycine max
  • SE1820228
  • Mutator
  • M45
  • Gm11:37881406-37881659
  • TTATTATTA
  • AGAGAAAATTACATTGACACCCCATGTGGCTTCTTCAAATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTATT                       A     C        AT  CACACA      C            G  C            C    -----A       ---------      AA  CA   AT
        AGAGAAAATTACATTGACACCCC TGTGG TTCTTCAA  TG      ATACCT TGCCTTTTTAAC TT ACAGTGACCCCC TTAG      GGGGTAC         ACATGC  TG  TTT  
        ||||||||||||||||||||||| ||||| ||||||||  ||      |||||| |||||||||||| || |||||||||||| ||||      |||||||         ||||||  ||  |||   
        TCTCTTTTAATGTAACTGTGGGG ATACC AAGAAGTT  AC      TATGGA ATGGAAAAATTG GG TGTTATTGGGGG AATT      CTTTATG         TGTACG  AC  AGA  
ATTATTAT                       G     A        CT  TTTTAC      -            G  A            -    AACAAA       TAACATCAC      GG  AA   GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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