SE1820230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10558
  • Glycine max
  • SE1820230
  • Mutator
  • M6
  • scaffold_66:162330-162817
  • TTTTATTAA
  • AAGGAAAAATTGCATTTTTGGTCCCCCATTTTATCTCCAATTTCGGATTTTGTCCCCTAGTAAAATTATTCACGAATTTTGTCCTCGTATTTAATCAAATCACACAATGTTGGTCCCCAAGCCCACAATTGGATGTTGACTGTTACAGGCATGTAACTGGCACATGTCACTTTTCTTATTGGATGATGATTGCCACGTGTCATGTTCTAATTGGATGTCAATTCCAT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTATT        A     TT                                        C                                             CA              A                              --C    -A    G  CA      TT          A                         A     A    -  TT    GGAA    AA
       AAGGAAAA TTGCA  TTTGGTCCCCCATTTTATCTCCAATTTCGGATTTTGTCCC TAGTAAAATTATTCACGAATTTTGTCCTCGTATTTAATCAAATCA  CAATGTTGGTCCCC AGCCCACAATTGGATGTTGACTGTTACAGG   ATGT  ACTG CA  TGTCAC  TTCTTATTGG TGATGATTGCCACGTGTCATGTTCT ATTGG TGTC AA  CCAT    GATG  
       |||||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||   ||||  |||| ||  ||||||  |||||||||| ||||||||||||||||||||||||| ||||| |||| ||  ||||    ||||  A
       TTCCTTTT AACGT  AAACCAGGGGGTAAAGTAGAGGTTAAAGTCTAAAACAGGG GTCATTTTAATAAGTGCTTAAAACAGGAGCATAAATTAGTTTAGT  GTTACAACCAGGGG TCGGGTGTTAACCTACAACTGACAATGTTT   TACA  TGAC GT  ACAGTG  AAGAATAACC ACTACTGACGGTGCACAGTACAAGA TAACT GTAG TT  GGTG    TTAC  
AATTATT        A     TT                                        A                                             AC              G                              CAT    AC    G  AC      -C          G                         C     A    C  TT    ----    GT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End