Plant MITE

SE1850231

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10559
Glycine max
SE1850231
PIF/harbinger
To24
Gm15:17807367-17807589
TAA
GTGCATATTTGGATT

Secondary structure and sequence

TSD TIR

5'

3'

  TAA    ATA        AAAAT  -    ----       ---    GGTCAAACTTAAGTTTGCAACTTGAGTTTACAAAAGTATCCCAAGTCTTCTTCAAAACTGAATTTGAA
     GTGC   TTTGGATT     TT GTAA    ATTTAAG   TTTG                                                                    
     ||||   ||||||||     || ||||    |||||||   ||||                                                                    G
     CATG   AAACCTAA     CT CCCT    GGTTTTA   CAAA                                                                    
AATCC    --C        --AGT  A    CTCA       ATA    CTCTCATTTTAGTCAAATTGCAGTACAAACCAATAGGGAGTTTTCATACAAGTTTTCATTTTAAAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1850231

TAAGTGCATATTTGGATTAAAATTTGTAAATTTAAGTTTGGGTCAAACTTAAGTTTGCAACTTGAGTTTACAAAAGTATCCCAAGTCTTCTTCAAAACTGAATTTGAAGGCAAAATTTTACTTTTGAACATACTTTTGAGGGATAACCAAACATGACGTTAAACTGATTTTACTCTCAAACATAATTTTGGACTCTCCCATCTGAAATCCAAACGTACCCTAA

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