SE1820232

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10560
  • Glycine max
  • SE1820232
  • Mutator
  • M24
  • Gm10:46964279-46964680
  • TATTATATA
  • TATATAGGCTTAATTATAAAAATATTCTCCCTATTTATCCTAATTCATTAAATCGGTCTCCTTATATTTTAATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT       ---                 TTC    -     A  C     C       C G    C               ATATGGCTTA                  --   T   -C      -------------    CCTATGACTAAAATTGAACATTAACTATTAACAAAAAATATTGACTGTCACGTGTCATTATGTAATTGGTCG
   TATATAG   GCTTAATTATAAAAATA   TCCC TATTT TC TAATT ATTAAAT G TCTC TTATATTTTAATTCA          ATTAGAGTTCTTTTTTTT  TAA TGA  TATTTG             AGTC                                                                        
   |||||||   |||||||||||||||||   |||| ||||| || ||||| ||||||| | |||| |||||||||||||||          ||||||||||||||||||  ||| |||  ||||||             ||||                                                                        T
   ATATATT   CGAATTAATGTTTTTAT   AGGG ATAAA AG ATTGA TAATTTA C AGGG AATATAAAATTAAGT          TAATCTCAAGAAAAAAAA  ATT ACT  ATAAAC             TTTT                                                                        
          ATA                 --C    T     A  A     A       A A    A               --------AA                  AA   T   CA      ATAAAACTCTCGT    AATCTGCAACTGATAATTCCTTTTCACAACTAACAGTGCACAGTAATAGATTAATTTCTGTGTACTAGCAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3