Plant MITE

SE1830240

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10568
Glycine max
SE1830240
hAT
Hat13
Gm03:8196054-8196617
CACATGAA
CATGAATAGGGGTGGGTAA

Secondary structure and sequence

TSD TIR

5'

3'

CA    AA                    GACCC  CTCGCATAAGGCCCGCCCATATAAGCCCGCATTGGCAATGAACTGGGCCAGCCCACCCTGCATTCTTACATGGACCAAATAAATTGGTCCGCCCCCGCCCCGCAGACCTCGTAGGTCAAACGGGCCGATCCACGAGCCTAGTTTTAAAAGAATTTCAATTTCAATAAAAATACAACACAATCAAATTAAGTTCAATACAAATGTAAATAAAATCTTAACAATTAGTCAATTACATCAATAAAATAAATA
  CATG  TAGGGGTGGGTAAGCGGGCC     GC                                                                                                                                                                                                                                                         
  ||||  ||||||||||||||||||||     ||                                                                                                                                                                                                                                                         A
  GTAC  ATCCCTACCCATTTACCTGG     GT                                                                                                                                                                                                                                                         
AA    AC                    -----  CCAGGTACCTAACTGGGTACCCCGGGCGCCAGGTGCGCCCATTGCCTGGTTAAAAAAATTTACCAGGTACCAATACAGTATAAAAAACCGGGCAGGGCGACTTGGGCGTCTGATACGCCCAAACCGGGCACCCCAGGCGCCCAACGGACGTAATCCTAAAATAACGAAGTTTATACCTTAGTAAACAACAACCTCTACAAATTCAAAGTATAAAATCTAAATAACGAATCTAAAATAAAACAATTCTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830240

CACATGAATAGGGGTGGGTAAGCGGGCCGACCCGCCTCGCATAAGGCCCGCCCATATAAGCCCGCATTGGCAATGAACTGGGCCAGCCCACCCTGCATTCTTACATGGACCAAATAAATTGGTCCGCCCCCGCCCCGCAGACCTCGTAGGTCAAACGGGCCGATCCACGAGCCTAGTTTTAAAAGAATTTCAATTTCAATAAAAATACAACACAATCAAATTAAGTTCAATACAAATGTAAATAAAATCTTAACAATTAGTCAATTACATCAATAAAATAAATAATTTCTTAACAAAATAAAATCTAAGCAATAAATCTAAAATATGAAACTTAAACATCTCCAACAACAAATGATTCCATATTTGAAGCAATAAAATCCTAATGCAGGCAACCCGCGGACCCCACGGGCCAAACCCGCATAGTCTGCGGGTTCAGCGGGACGGGCCAAAAAATATGACATAACCATGGACCATTTAAAAAAATTGGTCCGTTACCCGCGTGGACCGCGGGCCCCATGGGTCAATCCATGGACCTGGGTCCATTTACCCATCCCTACACATGAA

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