SE1820241

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10569
  • Glycine max
  • SE1820241
  • Mutator
  • M6
  • Gm14:2455846-2456368
  • TATAATATA
  • TATAATATAGGCAAAATTGCATTTTTGGTCCCCCTAGTTGTCTCCAATTTCGATTTTGGTCCCCCTTTAAAATTATTGACGCATTTAGTCCTCCAATTATGTTCAATCCTGTGAATGTGGTTCCCAAGTCCAGATTTAAACGTTGACTGTTACAAAGGAATGTTGATTGCCACGTGTCACATTTTGATTGGACGATGATTGCCACGTGTCACATTTTGATTGGACGATGACTGT

Secondary structure and sequence

TSD    TIR
5'



3'
    A                                                    G                     C          CTC                                             A                 G            C                               C       C              C A     G --CA     CATGTTCTGATTGGACGTT
TATA TATAGGCAAAATTGCATTTTTGGTCCCCCTAGTTGTCTCCAATTTCGATTTT GTCCCCCTTTAAAATTATTGA GCATTTAGTC   CAATTATGTTCAATCCTGTGAATGTGGTTCCCAAGTCCAGATTTA ACGTTGACTGTTACAAA GAATGTTGATTG CACGTGTCACATTTTGATTGGACGATGATTG CACGTGT ACATTTTGATTGGA G TGACT T    TGTGT                   
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||| |    |||||                   G
ATAT ATATCCGTTTTAACGTAAAAACCAGGGGGATCAATAGAGGTTAAAGTTAAAA CAGGGGGAAATTTTAATAACT CGTAAATCAG   GTTAATACAAGTTAGGGCATTTACACTGGGGGTTCAGGTCTAAAT TGCAATTGACAATGTTT CTTACAACTGAC GTGCACAGTGTAAGATTAATCTGTTACTGAC GTGCACA TGTAAAACTAACCT C ACTGA A    TGTTA                   
    A                                                    A                     A          AAA                                             C                 A            T                               A       T              A A     G CACC     CTTTTACATAACAACAACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End