SE1810252

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10580
  • Glycine max
  • SE1810252
  • Tc1/Mariner
  • St12
  • Gm18:2627057-2627352
  • TA
  • TACTCCCTTTGGACTCGTATATAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                         A   AA  ACTAATTTCACATTATTAAGAAAGTTAGTTCACATCATTTAATTTTACTAATCTCAAATAAAAAATAAGGTTATTTCTAAAATGTCCTTCATTGGAACTTGTTATCATGAATAAAA
TACTCCCTTTGGACTCGTATATAAG AAA  TA                                                                                                                    
||||||||||||||||||||||||| |||  ||                                                                                                                    A
ATGAGGGAAACCTGAGTATATATTC GTT  TT                                                                                                                    
                         -   --  CTCACCAGAACATACAGCCTGAATTTATATTCGTTTAGATTGATTAAAACAGGATAAATTATGAAAGTAAGGATTTTGTGGGAAGTAAATTAAGATTAAGATAAAGGTTATTGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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