Plant MITE

SE1830256

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10584
Glycine max
SE1830256
hAT
Hat4
Gm10:36409308-36409835
CCTTGGAC
CCTTGGACTAGGGGTGGAAATAGGTCAGGTCGGCC

Secondary structure and sequence

TSD TIR

5'

3'

    TT  AC         A             -    TACA     -----  AC  GCTGGCCTACATAAAGCCTGACCTGAACTGGCCTATTTAATTAAAAGGTTAGGCTCAGGCTTTTTTAAAAGCCTATTAAATTAAATAGATACCAATATATAATATTATTTTTTGGATACAATTAGTTTTTTTTTTTAAACTATCAGACTTTGATTACACATTATTGTTCCATAACTTCTATTCCTATAATCAAGGACTTTAATTACAATTTAGG
  CC  GG  TAGGGGTGG AATAGGTCAGGTC GGCC    GGGGC     CT  GA                                                                                                                                                                                                                      
  ||  ||  ||||||||| ||||||||||||| ||||    |||||     ||  ||                                                                                                                                                                                                                       
  GG  CC  ATCCCCACT TTATCCGGTCCGG CCGG    TCCGA     TC  CG                                                                                                                                                                                                                      
CA  TT  --         C             T    ----     AACTT  --  GACTCGGATCGGATACTATTTAGAAACTCCGGACTCGAACCGGATATCGGATAGTTTCCGAAAATAAAACCGAGCCGGACCGGTCTATCGGAAAAATTTTCAGAAGAAGTGTTATTTATAAATTATAAAATACCTCATCCTTGCATTATCCTTTCAATTTTTTTTCCTTTCAGTTAGTTTTATTACTCCTTATATTTTCCTGTGTACTGAGTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830256

CCTTGGACTAGGGGTGGAAATAGGTCAGGTCGGCCTACAGGGGCCTACGAGCTGGCCTACATAAAGCCTGACCTGAACTGGCCTATTTAATTAAAAGGTTAGGCTCAGGCTTTTTTAAAAGCCTATTAAATTAAATAGATACCAATATATAATATTATTTTTTGGATACAATTAGTTTTTTTTTTTAAACTATCAGACTTTGATTACACATTATTGTTCCATAACTTCTATTCCTATAATCAAGGACTTTAATTACAATTTAGGTGTGAGTCATGTGTCCTTTTATATTCCTCATTATTTTGATTGACTTTCCTTTTTTTTAACTTTCCTATTACGTTCCTACTCCATAAAATATTAAATATTTATTGTGAAGAAGACTTTTAAAAAGGCTATCTGGCCAGGCCGAGCCAAAATAAAAGCCTTTGATAGGCTATAGGCCAAGCTCAGGCCTCAAAGATTTATCATAGGCTAGGCTCAGGCCTTTCAAAGCCTGGCCTGGCCTGGCCTATTCTCACCCCTACCTTGGAC

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