SE1820258

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10586
  • Glycine max
  • SE1820258
  • Mutator
  • M1
  • Gm05:25120527-25120985
  • CTTTGTAGC
  • AGCGGGTGTTGCTAGGTGCACCCAACATTATTGCTGATACACCCAGCACTTAAGGTAAAATAACGAAAATACCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
 CTTTGT  C                     AC          A           C    GG       A     A      -    ----- C - AAGCCATTTAAGTTGATCCGTAAAAGTCTTACGGATCAACTTAATCCGTAGAAACCTTATGGATCAACTTGATCCGTAAACCTTTTACGGAACAATACGGATCAACGTGATCCGTAAGCTTTTTACGGATCAACTTGA
       AG GGGTGTTGCTAGGTGCACCCA  ATTATTGCTG TACACCCAGCA TTAA  TAAAATA CGAAA TACCCT TGAT     C G T                                                                                                                                          
       || |||||||||||||||||||||  |||||||||| ||||||||||| ||||  ||||||| ||||| |||||| ||||     | | |                                                                                                                                           
       TC CTCACAACGATCCACGTGGGT  TAATAACGAC ATGTGGGTTGT AATT  ATTTTAT GTTTT ATGGGG TGTG     A G G                                                                                                                                          
CGATGTT  -                     CA          C           A    -A       G     G      A    AAAAA - C TAAACACTACCCACACACACTCACACTAGACATTTAGCATGCCTAGTTCAACTAGGCATTCTAACTATGCCTAGTTGAACTAGGCATTCGAAAAATGCCTTGTTATGCCTAGTTGTACTAGGCATTTTCAGAATGCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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