Plant MITE

SE1810261

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10589
Glycine max
SE1810261
Tc1/Mariner
St1
Gm08:39564340-39564636
TA
TACTACCTCTATTCCTTTTTATATGACCCAA

Secondary structure and sequence

TSD TIR

5'

3'

     C  CTA     T      T       CTTTTAAACTTGT   TT    TATATAAGACTCAATCCATATTATCTCATGCATTAATTATTTTTAGACCATAAATACCCCTAATTAAATAAGAGAGACATTATATTAACATTCATTTAGAA
TACTA CT   TTCCT TTTATA GACCCAA             TTG  TCTT                                                                                                     
||||| ||   ||||| |||||| |||||||             |||  ||||                                                                                                     G
ATGAT GA   AAGGA AAATAT CTGGGTT             GGA  TTAA                                                                                                     
     A  AAA     T      T       ----------AAT   --    ATGGTTCTAATTCTTTTCATCAATTAAATCAACTATCATTATTTAAACAGGATTTAAATATATGAAAAAGTTTTTATGGTAACAGTAATTACAAAGGGAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1810261

TACTACCTCTATTCCTTTTTATATGACCCAACTTTTAAACTTGTTTGTTTCTTTATATAAGACTCAATCCATATTATCTCATGCATTAATTATTTTTAGACCATAAATACCCCTAATTAAATAAGAGAGACATTATATTAACATTCATTTAGAAGAGAGGGAAACATTAATGACAATGGTATTTTTGAAAAAGTATATAAATTTAGGACAAATTTATTACTATCAACTAAATTAACTACTTTTCTTAATCTTGGTAAATTAGGTAATTGGGTCTTATAAATAGGAAAAAAGATAGTA

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