Plant MITE

SE1830264

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10592
Glycine max
SE1830264
hAT
Hat4
Gm11:28973523-28974151
CAATGTCA
TGTCACTAGGGGTGGGAATAGGTCAGGCC

Secondary structure and sequence

TSD TIR

5'

3'

CAA  T  -C                           CAGGCTTTGAAAGGCCTGAGCCTAGTCTACGCTGAATTTTTGAGGCCTGAGTCTAGCTTATATAGCTTATCAAAAACTTTTATTTTGACTTGGCCTGGTCTATTAAAAAGTCTAGTCTGGCCTGATAGTCTTTTTAAAAGCCTTCTTCGCATTAAATATGTAATATTATGAGGAACGTAAAAGGAAAGTTAAAGGAAAAGGAAACATGAATAGGAATAGGAAAGCCAATAAAAATAATGAGAAATATAAAGGGACACATGACTCACACCTAAATTATAA
   TG CA  TAGGGGTGGGAATAGGTCAGGCCAGAC                                                                                                                                                                                                                                                                                       
   || ||  |||||||||||||||||||||||||||                                                                                                                                                                                                                                                                                        
   AC GT  ATCCCCACCTTTATCCGGTCTGGCCGG                                                                                                                                                                                                                                                                                       
  C  T  AA                           ATGTCCCCGGATGCTGGACTGGATGTATTTCAGACCAGACTTGACCGGATAAATTAATTTTCCAATCTGAGTCTGAAAAAATTTTCGGATAATTTAATTTATCTGGTCCGAATCCGAATAATTTTTCAGAATATTCGGCCTATCGGGCCGGATATATATACATATATATGAATATAATAAAAAACTCATGGTTATATATGAATATAATAAAAAACCCATCTGAAACTAATGTGTAATCACGAGGTATTGAAGATAAAGATATTAGTTCATTCTGAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830264

CAATGTCACTAGGGGTGGGAATAGGTCAGGCCAGACCAGGCTTTGAAAGGCCTGAGCCTAGTCTACGCTGAATTTTTGAGGCCTGAGTCTAGCTTATATAGCTTATCAAAAACTTTTATTTTGACTTGGCCTGGTCTATTAAAAAGTCTAGTCTGGCCTGATAGTCTTTTTAAAAGCCTTCTTCGCATTAAATATGTAATATTATGAGGAACGTAAAAGGAAAGTTAAAGGAAAAGGAAACATGAATAGGAATAGGAAAGCCAATAAAAATAATGAGAAATATAAAGGGACACATGACTCACACCTAAATTATAATTAAAGTCTTACTTGATTATAGAAATAGAAGTTATGGAGCACTAATGTGTAATCAAAGTCTACCCAAAAAATAATATAAGTATATATTGGTACTCAAAAAATAATATAAGTATATATACATATATATAGGCCGGGCTATCCGGCTTATAAGACTTTTTAATAAGCCTAAGCCTGGTCTATTTAATTTAATAGGCTTTTAAAAAAGTCTGAGTCTAACCTTTTAATTAAATAGGCCAGTTCAGACCAGACTTTATGTAGGTCAGGTCGTAGGCCCCTGTAGGCCGGTCTGGCCTATTTCCACCCCTAAATGTCAC

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