Plant MITE

SE3140001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10598
Fragaria vesca
SE3140001
CACTA
FrvC1
unanchored:6083338-6083527
TAT
TCACTACTACAATTTTGAGCAATAACCACATATCTAGTGTAGTCATTAGGGG

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCAA                       AAC                          TGTTGCAATCT     T      CAATTTCCTCTCATACCCCACCA
                    TCACTACTACAATTTTGAGCAAT   CACATATCTAGTGTAGTCATTAGGGG           TCATA GTGTGG                       
                    |||||||||||||||||||||||   ||||||||||||||||||||||||||           ||||| ||||||                        
                    AGTGATGATGTTAAAACTCGTTA   GTGTGTAGATCACATCGGTAATCTCC           AGTAT TACACC                       
                  TA                       CCA                          -----------     T      ATTTATTCTTTTAATCATTTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3140001

TATACTCNGTCATNCTNCAATCACTACTACAATTTTGAGCAATAACCACATATCTAGTGTAGTCATTAGGGGTGTTGCAATCTTCATATGTGTGGCAATTTCCTCTCATACCCCACCAATATTTACTAATTTTCTTATTTACCACATTTATGACCTCTAATGGCTACACTAGATGTGTGACCATTGCTCAAAATTGTAGTAGTGAAT

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