SE3130006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10603
  • Fragaria vesca
  • SE3130006
  • hAT
  • Frvh2
  • LG7:18166847-18167507
  • TATACTCN
  • TACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     NG    NCTNCTATGAGTGCAGGGGCGGATCCAGAAATGGAAACCGGGTGGGACTTAGACTTTCCACCACAGAAACAGAAAAAAAAAAAAAAAAAAAAACCTCGACAGTGCGTGAGCAATTTAGATATTGAAATGAAAAATATACCTAGATATGGAGAATGTAGTGAGTCTTTACCCTCAAATACATTAACAAGATTTATAAAACTCTTTAGATGTAACACACAAGAGGCTAAATAAACACATCAAATGCAATACAAAATATGTCAATGTAAAACCTAGCTCGACTAACTATATATAGAAATCAATAACATGTTCTTTCATAGAAATCCGTCAA
  TACTC  TCAT                                                                                                                                                                                                                                                                                                                                        
  |||||  ||||                                                                                                                                                                                                                                                                                                                                        C
  GTGAG  TATG                                                                                                                                                                                                                                                                                                                                        
       --    TCCCCGCCTAGATCCGAAGGACCGGACCCTGAGTTCAGGGTGAATTTAACAAATCCTTTTCTTAATGATGTACATCAATCGAATATTTTATTTATAATATATATAACTTACAATACAGGTCCATAGTGAGTGATTGTCTATATAGAGATGTTCAAGAAGTGAGAAGGCACTCAAGGTAGGGTGGGTTAATTAGTAAGAGTAATAGAGTCAAACAATGGTGTATTAATGAGCAGTAGAATTAACATACGCTCATAAATAATAACAAACTAATATTAATTGATTTAATTCTAACCCCCTTTTAATTTAGTTGCAACTATTCCCAATCAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3