SE3120008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10605
  • Fragaria vesca
  • SE3120008
  • Mutator
  • FrvM5
  • LG6:2988095-2988493
  • TATACTCNG
  • CTATAGGAGAAATTTTTAAGTACTACGGGAGGACCACTTGACAGTCTGATGTGGTCCTACATTCCAATCAAATTTAGACATGTGGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCCCA     ---            A   A     G         T                              C                    TTTACAACT       AAACTAATATTTTCTATTTTTTATGAAATGACATTCATGGATATTTAGCAAGTTCAACCTAGGGTCTAGGGTTTAGGGTTTAGGGTTTAGGTTTAG
                     CTATA   GGAGAAATTTTT AGT CTACG GAGGACCAC TGACAGTCTGATGTGGTCCTACATTCCAAT AAATTTAGACATGTGGATTT         AAAATAT                                                                                                
                     |||||   |||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||         |||||||                                                                                                 
                     GATAT   CCTCTTTAAAAA TCA GATGC CTCCTGGTG ACTGTCAGATTGTACCAGGATGTAAGGTTA TTTAAATCTGTACACCTAAA         TAAGTAC                                                                                                
                          CAC            G   C     A         C                              A                    ---------       TTTTAAATAAAGTCGATAAAACAGTTTCTGGTAAAACCCAAAATACAACAAAAAATTTGGGATTTGGGATTTGGGAATTTGGGATATGGGATATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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