Plant MITE

SE3120009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10606
Fragaria vesca
SE3120009
Mutator
FrvM6
LG6:18703750-18703938
TATACTCNG
GGCTAGTGTTATTAACACACATTTTTGTGTTATTAACACACCTCATCTAT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCCAAATTAAA                    A           T          C      TTTCCTAT   --   ATTT   T    TTTACAAA
                           GGCTAGTGTTATTAACACAC TTTTTGTGTTA TAACACACCT ATCTAT        CTA  CAT    CAA TTTA        
                           |||||||||||||||||||| ||||||||||| |||||||||| ||||||        |||  |||    ||| ||||        C
                           CCGATCACAATAATTGTGTG GAAAACACAAT ATTGTGTGGA TAGATA        GAT  GTA    GTT AAGT        
                  AAATTAAAC                    G           T          A      TTACTCTT   TA   CTTT   T    TCACCATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120009

TATACTCNGTCATNCTNCCAAATTAAAGGCTAGTGTTATTAACACACATTTTTGTGTTATTAACACACCTCATCTATTTTCCTATCTACATATTTCAATTTTATTTACAAACTTACCACTTGAATTTGTTTCATGATTAGTTCTCATTATAGATAAGGTGTGTTATTAACACAAAAGGGTGTGTTAATAACACTAGCCCAAATTAAA

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