SE3120011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10608
  • Fragaria vesca
  • SE3120011
  • Mutator
  • FrvM7
  • LG2:22908429-22909064
  • TAATGAAGA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
T        ATA  AATCATCAGTTTTCATTTAGATAGATTTCATAAATTAATTGAGAAATTTTATTCACACATACCAAATTTCTTAATGCACACCCTTATTTTTAAGAAATTTTTTTATATAATTATACCCCTATGATAAAGATGAACAGAAAGAGAATTAAACAAATAAACAAATTTCAGTTTGGATGCTAGGCTTTTAAATTTCTATACATATTTACTACTCTAGTAATCTGTAGTCTGCAAGCTTCTTAGTGATATCAAATTTCCATACTATTTTGACTGATTGAAAAATCTTAGATGTAATTTGAGTGAGAGAAT
 AATGAAGA   GT                                                                                                                                                                                                                                                                                                                  
 ||||||||   ||                                                                                                                                                                                                                                                                                                                  T
 TTAATTAA   CT                                                                                                                                                                                                                                                                                                                  
         --A  CTTTAAAATAAATGTGTGGGAATATATGAATTATGTGTGGAGAATAAAAAAAATTAGATTAAAAGAAAGGGATTTGAAGGAGAATATGGGAGAAATAAAATGACTTATGTGTGAGTAGAAAATTGAGTAGTACAAGAAGGAAATCGGTTTTGGCTAAGGTGTATTCTGAGCTAGATAAAAGAGTCGAGATACTAATTACGATGGTTAAAAAGATGATTTTAGTTTAGCTTAACTATTTGTCTACTTCGAATTGTTTGTTAGTTCCCTCTGTTTTACTAACTTCTAAAATAATAATAATAATAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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