SE3120012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10609
  • Fragaria vesca
  • SE3120012
  • Mutator
  • FrvM8
  • LG2:2523082-2523477
  • TATACTCNG
  • GAATTAAATTCAGTTTACCCCCATGAGGTTTGGGAGTAACTTCATGTTAATCCCTATACTTTCAATTTCATCAGTTTACCACTCAAACTTTTGAATTTTCCTCAACCGTGACCAATGTCTTATCTTCTGTCCAAATTAGACGTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                         TATACTCNGTCATNCTNNCCTAAATCTA                 C    A  A        A  A           A            C                 A   -A       G      CC  A      A    TG      C  C   CCA    A   -     CTGCT    ATTTTAA   TA
                                                     GAATTAAATTCAGTTTA CCCC TG GGTTTGGG GT ACTTCATGTTA TCCCTATACTTT AATTTCATCAGTTTACC CTC  AACTTTT AATTTT  TC ACCGTG CCAA  TCTTAT TT TGT   AATT GAC GTTAA     GATA       CAT  
                                                     ||||||||||||||||| |||| || |||||||| || ||||||||||| |||||||||||| ||||||||||||||||| |||  ||||||| ||||||  || |||||| ||||  |||||| || |||   |||| ||| |||||     ||||       |||  A
                                                     CTTAATTTAAGTCAAAT GGGG AC CCAAATCC CA TGAAGTACAAT AGGGATATGAAA TTAAAGTAGTCAAATGG GGG  TTGAGAA TTAAAG  AG TGGCAC GGTT  AGAGTA AA ACA   TTAA CTG TAATT     CTAT       GTG  
ATCGAAAATAACAACTGATATCATTAAAAACAACAACCGCCATCATCTAAATC                 A    A  A        C  C           C            A                 -   AC       G      AC  A      G    TG      T  A   AAC    -   G     AAGAT    -GCCCGG   TC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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