SE3120017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10614
  • Fragaria vesca
  • SE3120017
  • Mutator
  • FrvM11
  • LG5:17066764-17067274
  • TATACATTA
  • ATTAATGGACTAATTTCAGTTTACGCCCATCAACTTTAAGTCGATCATCATGTTAGTCCATGTTTTTTCAATTTCATCAAAAACATCTCTCGACTTCCAATTTTCATCAACCGTGTCC

Secondary structure and sequence

TSD    TIR
5'



3'
TATAC       ---         C       G             AG                  CA G                      A            C          AAC GTG   AAACA   A      A         -   G   TTTA     T  -             AC       G  --------------   GCTGG -----  CACAGAAAAAAGGGCAAAATAGACAAATTGCATTCAATCCCACCAAAAT
     ATTAATG   GACTAATTT AGTTTAC CCCATCAACTTTA  TCGATCATCATGTTAGTC  T TTTTTTCAATTTCATCAAAAAC TCTCTCGACTTC AATTTTCATC   C   TCC     TCC TTTTCC TCCAATTCC CCG TTA    ATGAC TG CATTAAGAAGAAA  CAAATTT AA              GTC     G     CC                                                 
     |||||||   ||||||||| ||||||| |||||||||||||  ||||||||||||||||||  | |||||||||||||||||||||| |||||||||||| ||||||||||   |   |||     ||| |||||| ||||||||| ||| |||    ||||| || |||||||||||||  ||||||| ||              |||     |     ||                                                 C
     TAATTAC   TTGATTAAA TTAAATG GGGTAGTTGAAAT  AGCTAGTAGTACAATCAG  A AAGAAAGTTAAAGTAGTTTTTG GGGGAGTTGAGG TTAAAAGTAG   G   AGG     AGG AAGAGG AGGTTAAGG GGC AGT    TACTG AC GTAATTCTTCTTT  GTTTAAG TT              CTG     T     AG                                                 
            ATC         A       A             CA                  TA G                      C            A          --A ATA   -----   C      C         A   -   TCAC     C  T             CA       G  TTTTTATTCAAAAA   ----- TAAAA  GGGTATAGCTATGTACAGAAATAAGGGTAGTGTTGGGGGATTGGAATCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End